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SRX5096432: RNAseq of C. scindens:CA1
1 ILLUMINA (Illumina HiSeq 4000) run: 15.6M spots, 1.6G bases, 549.2Mb downloads

Design: * Ribosomal RNA was removed with the Ribozero Bacteria kit (Illumina). The RNAseq libraries were prepared with Illumina's 'TruSeq Stranded mRNAseq Sample Prep kit' (Illumina). Read 1 aligns to the ANTISENSE strand and Read 2 aligns to the SENSE strand. * The libraries were quantitated by qPCR and sequenced on one lane for 101 cycles from one end of the fragments on a HiSeq 4000. using a HiSeq 4000 sequencing kit version 1. Fastq files were generated and demultiplexed with with the bcl2fastq v2.20 Conversion Software (Illumina).
Submitted by: UIUC
Study: [Clostridium] scindens ATCC 35704 Genome sequencing and assembly
PRJNA508260 • SRP172503 • All experiments • All runs
show Abstracthide Abstract
C. Scindens is one of the important gut microbes that has the ability to covert both bile acids and steroids
Sample: Microbe sample from [Clostridium] scindens ATCC 35704
SAMN10519000 • SRS4107464 • All experiments • All runs
Organism: [Clostridium] scindens ATCC 35704
Library:
Name: Cscind_CA1
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: PCR
Layout: SINGLE
Runs: 1 run, 15.6M spots, 1.6G bases, 549.2Mb
Run# of Spots# of BasesSizePublished
SRR828163215,601,1031.6G549.2Mb2019-02-27

ID:
6872894

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